1 Response_reg#1
6-102 aa · 97 aa · 41.5% of protein
Raw token
Response_reg:6:0.000000000257:102:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J7M94_RS03505
Response regulator LytTR family
Thomasclavelia sp. · GCF_017886715
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017886715#J7M94_RS03505Stable P2CS identifier used across views.
GenomeGCF_017886715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 234 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-225 aa · 93 aa · 39.7% of protein
Raw token
LytTR:133:0.00000000000035:225:98:98- Raw architecture: Response_reg:6:0.000000000257:102:104:111#LytTR:133:0.00000000000035:225:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017886715::NZ_JAGHJL010000014.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27033-27737Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_017886715::NZ_JAGHJL010000014.1::G00018Context members
J7M94_RS03505
Partner locus tags
J7M94_RS03505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539617.1Primary protein accession used for annex mappings.
UniProt accessionB0N955Primary UniProt accession resolved in the annex database.
UniProt IDB0N955_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ7M94_RS03505Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGHJL010000014.1Sequence record reported by the local genomic context database.
Genomic interval27 033-27 737 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 033-27 737 ntGCF_017886715::NZ_JAGHJL010000014.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017886715::NZ_JAGHJL010000014.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGHJL010000014.1All displayed genes belong to this local TCS context.
Neighborhood span27 033-27 737 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 033 nt27 737 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J7M94_RS03505GCF_017886715#J7M94_RS03505
RRLytTRCurrent focus
27 033-27 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS15130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047406
Simplified PFAM architecture for RROC_1047406
PFAM domain coverage: 196 / 234 aa (83.8%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-110] | LytTR[136-225]
- Domain count: 2
- Matched identifier: RROC_1047406
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; LytTR 136-225 ; LytTR 136-225
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS15130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 025 757 · GCF_017886715
AssemblyASM1788671v1 · Contighaploid
Genome composition3 355 068 bp · 31,0% GCThomasclavelia sp.
Signal transduction countsGenes 51 · HK 23 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key