1 HisKA#1
337-403 aa · 67 aa · 9.3% of protein
Raw token
HisKA:337:0.000000000000214:403:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS12015
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_017776445
ClassHKTypeHybridLength718 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017776445#JYQ74_RS12015Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length718 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 718 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa718 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
450-567 aa · 118 aa · 16.4% of protein
Raw token
HATPase_c:450:4.67e-26:567:118:1093 Response_reg#3
591-708 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:591:1.73e-30:708:118:111- Raw architecture: HisKA:337:0.000000000000214:403:67:64#HATPase_c:450:4.67e-26:567:118:109#Response_reg:591:1.73e-30:708:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017776445::NZ_JAFIQM010000130.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span10184-12340Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_12005RefSeq proteinWP_118627802.1
Context group ID
GCF_017776445::NZ_JAFIQM010000130.1::G00004Context members
JYQ74_RS12015
Partner locus tags
JYQ74_RS12015
Partner old locus tags
JYQ74_12005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118627802.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS12015Primary locus identifier stored in the genes table.
Old locus tagJYQ74_12005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000130.1Sequence record reported by the local genomic context database.
Genomic interval10 184-12 340 nt2 157 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 184-12 340 ntGCF_017776445::NZ_JAFIQM010000130.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000130.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000130.1All displayed genes belong to this local TCS context.
Neighborhood span10 184-12 340 nt2 157 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 184 nt12 340 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JYQ74_RS12015GCF_017776445#JYQ74_RS12015
HKHybridCurrent focus
10 184-12 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302855#G4941_RS14085Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0737049
Simplified PFAM architecture for HKOC_0737049
PFAM domain coverage: 300 / 718 aa (41.8%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[337-403] | HATPase_c[451-566] | Response_reg[591-707]
- Domain count: 3
- Matched identifier: HKOC_0737049
- Positioned domains: HisKA 337-403 ; HATPase_c 451-566 ; Response_reg 591-707
Cluster members and taxonomy
Representative gene: GCF_013302855#G4941_RS14085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key