1 HisKA#1
131-194 aa · 64 aa · 18.1% of protein
Raw token
HisKA:131:0.000000000000133:194:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS00105
Histidine kinase, Classic
Anaerostipes hadrus · GCF_017776445
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017776445#JYQ74_RS00105Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 354 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-352 aa · 110 aa · 31.1% of protein
Raw token
HATPase_c:243:2.18e-25:352:112:109- Raw architecture: HisKA:131:0.000000000000133:194:64:64#HATPase_c:243:2.18e-25:352:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017776445::NZ_JAFIQM010000017.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4147-5211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_00105RefSeq proteinWP_003505357.1
Context group ID
GCF_017776445::NZ_JAFIQM010000017.1::G00024Context members
JYQ74_RS00105
Partner locus tags
JYQ74_RS00105
Partner old locus tags
JYQ74_00105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003505357.1Primary protein accession used for annex mappings.
UniProt accessionE7GUN5Primary UniProt accession resolved in the annex database.
UniProt IDE7GUN5_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS00105Primary locus identifier stored in the genes table.
Old locus tagJYQ74_00105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000017.1Sequence record reported by the local genomic context database.
Genomic interval4 147-5 211 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 147-5 211 ntGCF_017776445::NZ_JAFIQM010000017.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000017.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000017.1All displayed genes belong to this local TCS context.
Neighborhood span4 147-5 211 nt1 065 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 147 nt5 211 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JYQ74_RS00105GCF_017776445#JYQ74_RS00105
HKClassicCurrent focus
4 147-5 211 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS05290Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2779216
Simplified PFAM architecture for HKOC_2779216
PFAM domain coverage: 174 / 354 aa (49.2%)
1 aa354 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-195] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2779216
- Positioned domains: HisKA 132-195 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS05290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key