1 HisKA#1
345-410 aa · 66 aa · 9.1% of protein
Raw token
HisKA:345:0.0000000000000189:410:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS07795
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_017776445
ClassHKTypeHybridLength726 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017776445#JYQ74_RS07795Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length726 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 726 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa726 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.7% of protein
Raw token
HATPase_c:463:8.38e-28:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.1% of protein
Raw token
Response_reg:599:2.19e-29:715:117:111- Raw architecture: HisKA:345:0.0000000000000189:410:66:64#HATPase_c:463:8.38e-28:576:114:109#Response_reg:599:2.19e-29:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017776445::NZ_JAFIQM010000091.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span64372-66552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_07795RefSeq proteinWP_209302296.1
Context group ID
GCF_017776445::NZ_JAFIQM010000091.1::G00029Context members
JYQ74_RS07795
Partner locus tags
JYQ74_RS07795
Partner old locus tags
JYQ74_07795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_209302296.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS07795Primary locus identifier stored in the genes table.
Old locus tagJYQ74_07795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000091.1Sequence record reported by the local genomic context database.
Genomic interval64 372-66 552 nt2 181 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 372-66 552 ntGCF_017776445::NZ_JAFIQM010000091.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000091.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000091.1All displayed genes belong to this local TCS context.
Neighborhood span64 372-66 552 nt2 181 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 372 nt66 552 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JYQ74_RS07795GCF_017776445#JYQ74_RS07795
HKHybridCurrent focus
64 372-66 552 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017776395#JYQ73_RS08180Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0721823
Simplified PFAM architecture for HKOC_0721823
PFAM domain coverage: 296 / 726 aa (40.8%)
1 aa726 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-410] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0721823
- Positioned domains: HisKA 345-410 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_017776395#JYQ73_RS08180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key