1 HAMP#1
184-252 aa · 69 aa · 13.9% of protein
Raw token
HAMP:184:6.83e-16:252:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS07025
Histidine kinase, Classic
Anaerostipes hadrus · GCF_017776445
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS07025Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 495 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.7% of protein
Raw token
HisKA:263:8.19e-16:330:68:643 HATPase_c#3
377-485 aa · 109 aa · 22.0% of protein
Raw token
HATPase_c:377:5.07e-32:485:109:109- Raw architecture: HAMP:184:6.83e-16:252:69:69#HisKA:263:8.19e-16:330:68:64#HATPase_c:377:5.07e-32:485:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000090.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104687-106865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_07025RefSeq proteinWP_008394128.1
Context group ID
GCF_017776445::NZ_JAFIQM010000090.1::G00017Context members
JYQ74_RS07020JYQ74_RS07025
Partner locus tags
JYQ74_RS07020JYQ74_RS07025
Partner old locus tags
JYQ74_07020JYQ74_07025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008394128.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ3JIZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ3JIZ7_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS07025Primary locus identifier stored in the genes table.
Old locus tagJYQ74_07025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000090.1Sequence record reported by the local genomic context database.
Genomic interval105 378-106 865 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 687-106 865 ntGCF_017776445::NZ_JAFIQM010000090.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000090.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000090.1All displayed genes belong to this local TCS context.
Neighborhood span104 687-106 865 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 687 nt106 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS07020GCF_017776445#JYQ74_RS07020
RROmpR
104 687-105 376 nt · Reverse (-)
JYQ74_RS07025GCF_017776445#JYQ74_RS07025
HKClassicCurrent focus
105 378-106 865 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS03895Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504710
Simplified PFAM architecture for HKOC_1504710
PFAM domain coverage: 228 / 495 aa (46.1%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-251] | HisKA[264-329] | HATPase_c[378-486]
- Domain count: 3
- Matched identifier: HKOC_1504710
- Positioned domains: HAMP 199-251 ; HisKA 264-329 ; HATPase_c 378-486
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS03895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key