1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000156:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS06425
Histidine kinase, Classic
Anaerostipes hadrus · GCF_017776445
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS06425Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 305 aa (74.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000591:150:66:643 HATPase_c#3
197-304 aa · 108 aa · 35.4% of protein
Raw token
HATPase_c:197:6.33e-31:304:108:109- Raw architecture: HAMP:4:0.0000156:56:53:69#HisKA:85:0.0000000591:150:66:64#HATPase_c:197:6.33e-31:304:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000089.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65550-67165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_06425RefSeq proteinWP_117638879.1
Context group ID
GCF_017776445::NZ_JAFIQM010000089.1::G00022Context members
JYQ74_RS06420JYQ74_RS06425
Partner locus tags
JYQ74_RS06420JYQ74_RS06425
Partner old locus tags
JYQ74_06420JYQ74_06425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117638879.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7ET65Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7ET65_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS06425Primary locus identifier stored in the genes table.
Old locus tagJYQ74_06425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000089.1Sequence record reported by the local genomic context database.
Genomic interval66 248-67 165 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 550-67 165 ntGCF_017776445::NZ_JAFIQM010000089.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000089.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000089.1All displayed genes belong to this local TCS context.
Neighborhood span65 550-67 165 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 550 nt67 165 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS06420GCF_017776445#JYQ74_RS06420
RROmpR
65 550-66 242 nt · Forward (+)
JYQ74_RS06425GCF_017776445#JYQ74_RS06425
HKClassicCurrent focus
66 248-67 165 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436075#DXD81_RS08330Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882332
Simplified PFAM architecture for HKOC_2882332
PFAM domain coverage: 172 / 305 aa (56.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-304]
- Domain count: 2
- Matched identifier: HKOC_2882332
- Positioned domains: HisKA 85-148 ; HATPase_c 197-304
Cluster members and taxonomy
Representative gene: GCF_003436075#DXD81_RS08330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key