1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:4.19e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS04045
Response regulator, unclassified
Anaerostipes hadrus · GCF_017776445
ClassRRTypeunclassifiedLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS04045Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 539 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-486 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:444:0.000000000419:486:43:423 HTH_AraC#3
500-535 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:500:0.000000233:535:36:42- Raw architecture: Response_reg:4:4.19e-31:117:114:111#HTH_AraC:444:0.000000000419:486:43:42#HTH_AraC:500:0.000000233:535:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000086.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68800-71885Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_04045RefSeq proteinWP_195465436.1
Context group ID
GCF_017776445::NZ_JAFIQM010000086.1::G00001Context members
JYQ74_RS04045JYQ74_RS04050
Partner locus tags
JYQ74_RS04045JYQ74_RS04050
Partner old locus tags
JYQ74_04045JYQ74_04050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195465436.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS04045Primary locus identifier stored in the genes table.
Old locus tagJYQ74_04045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000086.1Sequence record reported by the local genomic context database.
Genomic interval68 800-70 419 nt1 620 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 800-71 885 ntGCF_017776445::NZ_JAFIQM010000086.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000086.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000086.1All displayed genes belong to this local TCS context.
Neighborhood span68 800-71 885 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 800 nt71 885 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS04045GCF_017776445#JYQ74_RS04045
RRunclassifiedCurrent focus
68 800-70 419 nt · Forward (+)
JYQ74_RS04050GCF_017776445#JYQ74_RS04050
HKClassic
70 419-71 885 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554695#I2E60_RS00170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0092564
Simplified PFAM architecture for RROC_0092564
PFAM domain coverage: 319 / 539 aa (59.2%)
1 aa539 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[164-290] | HTH_18[459-537]
- Domain count: 3
- Matched identifier: RROC_0092564
- Positioned domains: Response_reg 4-116 ; GGDEF_2 164-290 ; HTH_18 459-537
Cluster members and taxonomy
Representative gene: GCF_015554695#I2E60_RS00170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key