1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.8e-35:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS01740
Response regulator NarL family
Anaerostipes hadrus · GCF_017776445
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS01740Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 222 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-210 aa · 53 aa · 23.9% of protein
Raw token
HTH_LUXR:158:1.47e-19:210:53:58- Raw architecture: Response_reg:4:1.8e-35:116:113:111#HTH_LUXR:158:1.47e-19:210:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000064.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20177-22164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_01740RefSeq proteinWP_209301981.1
Context group ID
GCF_017776445::NZ_JAFIQM010000064.1::G00013Context members
JYQ74_RS01735JYQ74_RS01740
Partner locus tags
JYQ74_RS01735JYQ74_RS01740
Partner old locus tags
JYQ74_01735JYQ74_01740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_209301981.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS01740Primary locus identifier stored in the genes table.
Old locus tagJYQ74_01740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000064.1Sequence record reported by the local genomic context database.
Genomic interval21 496-22 164 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 177-22 164 ntGCF_017776445::NZ_JAFIQM010000064.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000064.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000064.1All displayed genes belong to this local TCS context.
Neighborhood span20 177-22 164 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 177 nt22 164 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS01735GCF_017776445#JYQ74_RS01735
HKClassic
20 177-21 499 nt · Forward (+)
JYQ74_RS01740GCF_017776445#JYQ74_RS01740
RRNarLCurrent focus
21 496-22 164 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017776395#JYQ73_RS10355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1655166
Simplified PFAM architecture for RROC_1655166
PFAM domain coverage: 166 / 222 aa (74.8%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1655166
- Positioned domains: Response_reg 4-116 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_017776395#JYQ73_RS10355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key