1 Response_reg#1
2-115 aa · 114 aa · 50.4% of protein
Raw token
Response_reg:2:1e-33:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS01080
Response regulator OmpR family
Anaerostipes hadrus · GCF_017776445
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS01080Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 226 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:148:1.57e-34:221:77:77- Raw architecture: Response_reg:2:1e-33:115:114:111#Trans_reg_C:148:1.57e-34:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000046.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14328-16363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_01080RefSeq proteinWP_008393290.1
Context group ID
GCF_017776445::NZ_JAFIQM010000046.1::G00020Context members
JYQ74_RS01080JYQ74_RS01085
Partner locus tags
JYQ74_RS01080JYQ74_RS01085
Partner old locus tags
JYQ74_01080JYQ74_01085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008393290.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SH70Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SH70_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS01080Primary locus identifier stored in the genes table.
Old locus tagJYQ74_01080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000046.1Sequence record reported by the local genomic context database.
Genomic interval14 328-15 008 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 328-16 363 ntGCF_017776445::NZ_JAFIQM010000046.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000046.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000046.1All displayed genes belong to this local TCS context.
Neighborhood span14 328-16 363 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 328 nt16 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS01080GCF_017776445#JYQ74_RS01080
RROmpRCurrent focus
14 328-15 008 nt · Forward (+)
JYQ74_RS01085GCF_017776445#JYQ74_RS01085
HKClassic
15 005-16 363 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408933
Simplified PFAM architecture for RROC_1408933
PFAM domain coverage: 188 / 226 aa (83.2%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-115] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1408933
- Positioned domains: Response_reg 2-115 ; Response_reg 2-115 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key