1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:3.67e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ74_RS00295
Response regulator OmpR family
Anaerostipes hadrus · GCF_017776445
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776445#JYQ74_RS00295Stable P2CS identifier used across views.
GenomeGCF_017776445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:155:7.61e-33:231:77:77- Raw architecture: Response_reg:6:3.67e-35:115:111:111#Trans_reg_C:155:7.61e-33:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776445::NZ_JAFIQM010000022.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2850-5682Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ74_00295RefSeq proteinWP_009203611.1
Context group ID
GCF_017776445::NZ_JAFIQM010000022.1::G00025Context members
JYQ74_RS00295JYQ74_RS00300
Partner locus tags
JYQ74_RS00295JYQ74_RS00300
Partner old locus tags
JYQ74_00295JYQ74_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009203611.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SH10Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SH10_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ74_RS00295Primary locus identifier stored in the genes table.
Old locus tagJYQ74_00295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQM010000022.1Sequence record reported by the local genomic context database.
Genomic interval2 850-3 557 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 850-5 682 ntGCF_017776445::NZ_JAFIQM010000022.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776445::NZ_JAFIQM010000022.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQM010000022.1All displayed genes belong to this local TCS context.
Neighborhood span2 850-5 682 nt2 833 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 850 nt5 682 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ74_RS00295GCF_017776445#JYQ74_RS00295
RROmpRCurrent focus
2 850-3 557 nt · Forward (+)
JYQ74_RS00300GCF_017776445#JYQ74_RS00300
HKClassic
3 529-5 682 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS06115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017692
Simplified PFAM architecture for RROC_1017692
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1017692
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS06115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776445
AssemblyASM1777644v1 · Contighaploid
Genome composition2 981 576 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 26 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key