1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.000000229:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ73_RS12430
Histidine kinase, Classic
Anaerostipes hadrus · GCF_017776395
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017776395#JYQ73_RS12430Stable P2CS identifier used across views.
GenomeGCF_017776395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 439 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000474:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.00000524:419:90:109- Raw architecture: HAMP:144:0.000000229:211:68:69#HisKA:232:0.00000474:296:65:64#HATPase_c:342:0.00000524:419:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017776395::NZ_JAFIQN010000173.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93374-95343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ73_12435RefSeq proteinWP_008392738.1
Context group ID
GCF_017776395::NZ_JAFIQN010000173.1::G00013Context members
JYQ73_RS12425JYQ73_RS12430
Partner locus tags
JYQ73_RS12425JYQ73_RS12430
Partner old locus tags
JYQ73_12430JYQ73_12435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392738.1Primary protein accession used for annex mappings.
UniProt accessionA0A174UPM3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174UPM3_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ73_RS12430Primary locus identifier stored in the genes table.
Old locus tagJYQ73_12435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQN010000173.1Sequence record reported by the local genomic context database.
Genomic interval94 024-95 343 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 374-95 343 ntGCF_017776395::NZ_JAFIQN010000173.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776395::NZ_JAFIQN010000173.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQN010000173.1All displayed genes belong to this local TCS context.
Neighborhood span93 374-95 343 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 374 nt95 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JYQ73_RS12425GCF_017776395#JYQ73_RS12425
RROmpR
93 374-94 027 nt · Forward (+)
JYQ73_RS12430GCF_017776395#JYQ73_RS12430
HKClassicCurrent focus
94 024-95 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS02180Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2083084
Simplified PFAM architecture for HKOC_2083084
PFAM domain coverage: 143 / 439 aa (32.6%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-420]
- Domain count: 2
- Matched identifier: HKOC_2083084
- Positioned domains: HisKA 233-296 ; HATPase_c 342-420
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS02180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776395
AssemblyASM1777639v1 · Contighaploid
Genome composition3 002 464 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key