1 Response_reg#1
4-117 aa · 114 aa · 53.8% of protein
Raw token
Response_reg:4:2.42e-19:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JYQ73_RS01560
Response regulator NarL family
Anaerostipes hadrus · GCF_017776395
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017776395#JYQ73_RS01560Stable P2CS identifier used across views.
GenomeGCF_017776395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 212 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-195 aa · 53 aa · 25.0% of protein
Raw token
HTH_LUXR:143:3.73e-18:195:53:58- Raw architecture: Response_reg:4:2.42e-19:117:114:111#HTH_LUXR:143:3.73e-18:195:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017776395::NZ_JAFIQN010000114.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span77955-78593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJYQ73_01560RefSeq proteinWP_209302181.1
Context group ID
GCF_017776395::NZ_JAFIQN010000114.1::G00003Context members
JYQ73_RS01560
Partner locus tags
JYQ73_RS01560
Partner old locus tags
JYQ73_01560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_209302181.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJYQ73_RS01560Primary locus identifier stored in the genes table.
Old locus tagJYQ73_01560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFIQN010000114.1Sequence record reported by the local genomic context database.
Genomic interval77 955-78 593 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 955-78 593 ntGCF_017776395::NZ_JAFIQN010000114.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017776395::NZ_JAFIQN010000114.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFIQN010000114.1All displayed genes belong to this local TCS context.
Neighborhood span77 955-78 593 nt639 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 955 nt78 593 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JYQ73_RS01560GCF_017776395#JYQ73_RS01560
RRNarLCurrent focus
77 955-78 593 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017776395#JYQ73_RS01560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1994150
Simplified PFAM architecture for RROC_1994150
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[142-195]
- Domain count: 2
- Matched identifier: RROC_1994150
- Positioned domains: Response_reg 4-116 ; GerE 142-195
Cluster members and taxonomy
Representative gene: GCF_017776395#JYQ73_RS01560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_017776395
AssemblyASM1777639v1 · Contighaploid
Genome composition3 002 464 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key