1 Response_reg#1
4-101 aa · 98 aa · 87.5% of protein
Raw token
Response_reg:4:1.62e-20:101:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EY648_RS14475
Response regulator, CheY family
Enterococcus faecalis · GCF_017642305
ClassRRTypeCheYLength112 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017642305#EY648_RS14475Stable P2CS identifier used across views.
GenomeGCF_017642305Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length112 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage98 / 112 aa (87.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa112 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.62e-20:101:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017642305::NZ_SIXO01000041.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span194-529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEY648_15370RefSeq proteinWP_208790795.1
Context group ID
GCF_017642305::NZ_SIXO01000041.1::G00016Context members
EY648_RS14475
Partner locus tags
EY648_RS14475
Partner old locus tags
EY648_15370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208790795.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEY648_RS14475Primary locus identifier stored in the genes table.
Old locus tagEY648_15370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIXO01000041.1Sequence record reported by the local genomic context database.
Genomic interval194-529 nt336 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span194-529 ntGCF_017642305::NZ_SIXO01000041.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017642305::NZ_SIXO01000041.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIXO01000041.1All displayed genes belong to this local TCS context.
Neighborhood span194-529 nt336 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 nt529 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EY648_RS14475GCF_017642305#EY648_RS14475
RRCheYCurrent focus
194-529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017642305#EY648_RS14475The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2468228
Simplified PFAM architecture for RROC_2468228
PFAM domain coverage: 102 / 112 aa (91.1%)
1 aa112 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-105]
- Domain count: 1
- Matched identifier: RROC_2468228
- Positioned domains: Response_reg 4-105
Cluster members and taxonomy
Representative gene: GCF_017642305#EY648_RS14475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_017642305
AssemblyASM1764230v1 · Scaffoldhaploid
Genome composition3 007 308 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key