1 HisKA#1
190-255 aa · 66 aa · 16.0% of protein
Raw token
HisKA:190:0.000000000000558:255:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLL053_RS00220
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_017357345
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017357345#BLL053_RS00220Stable P2CS identifier used across views.
GenomeGCF_017357345Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 413 aa (42.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
303-413 aa · 111 aa · 26.9% of protein
Raw token
HATPase_c:303:7.05e-28:413:111:109- Raw architecture: HisKA:190:0.000000000000558:255:66:64#HATPase_c:303:7.05e-28:413:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017357345::NZ_CP071683.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47364-49336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLL053_00220RefSeq proteinWP_207608609.1
Context group ID
GCF_017357345::NZ_CP071683.1::G00001Context members
BLL053_RS00220BLL053_RS00225
Partner locus tags
BLL053_RS00220BLL053_RS00225
Partner old locus tags
BLL053_00220BLL053_00225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207608609.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLL053_RS00220Primary locus identifier stored in the genes table.
Old locus tagBLL053_00220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071683.1Sequence record reported by the local genomic context database.
Genomic interval47 364-48 605 nt1 242 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 364-49 336 ntGCF_017357345::NZ_CP071683.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357345::NZ_CP071683.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071683.1All displayed genes belong to this local TCS context.
Neighborhood span47 364-49 336 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 364 nt49 336 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLL053_RS00220GCF_017357345#BLL053_RS00220
HKClassicCurrent focus
47 364-48 605 nt · Reverse (-)
BLL053_RS00225GCF_017357345#BLL053_RS00225
RROmpR
48 650-49 336 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017357345#BLL053_RS00220The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2331016
Simplified PFAM architecture for HKOC_2331016
PFAM domain coverage: 174 / 413 aa (42.1%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-255] | HATPase_c[304-412]
- Domain count: 2
- Matched identifier: HKOC_2331016
- Positioned domains: HisKA 191-255 ; HATPase_c 304-412
Cluster members and taxonomy
Representative gene: GCF_017357345#BLL053_RS00220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_017357345
AssemblyASM1735734v1 · Complete Genomehaploid
Genome composition2 493 122 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key