1 HAMP#1
155-225 aa · 71 aa · 15.2% of protein
Raw token
HAMP:155:0.0000000956:225:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI708_RS09460
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_017357045
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017357045#BLI708_RS09460Stable P2CS identifier used across views.
GenomeGCF_017357045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 466 aa (55.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
229-295 aa · 67 aa · 14.4% of protein
Raw token
HisKA:229:0.0000000000563:295:67:643 HATPase_c#3
345-466 aa · 122 aa · 26.2% of protein
Raw token
HATPase_c:345:0.000000000432:466:124:109- Raw architecture: HAMP:155:0.0000000956:225:71:69#HisKA:229:0.0000000000563:295:67:64#HATPase_c:345:0.000000000432:466:124:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017357045::NZ_CP071591.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2244510-2246632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI708_09460RefSeq proteinWP_165781927.1
Context group ID
GCF_017357045::NZ_CP071591.1::G00016Context members
BLI708_RS09460BLI708_RS09465
Partner locus tags
BLI708_RS09460BLI708_RS09465
Partner old locus tags
BLI708_09460BLI708_09465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_165781927.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S142Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S142_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI708_RS09460Primary locus identifier stored in the genes table.
Old locus tagBLI708_09460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071591.1Sequence record reported by the local genomic context database.
Genomic interval2 244 510-2 245 910 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 244 510-2 246 632 ntGCF_017357045::NZ_CP071591.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357045::NZ_CP071591.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071591.1All displayed genes belong to this local TCS context.
Neighborhood span2 244 510-2 246 632 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 244 510 nt2 246 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI708_RS09460GCF_017357045#BLI708_RS09460
HKClassicCurrent focus
2 244 510-2 245 910 nt · Reverse (-)
BLI708_RS09465GCF_017357045#BLI708_RS09465
RROmpR
2 245 961-2 246 632 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS06410Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1764163
Simplified PFAM architecture for HKOC_1764163
PFAM domain coverage: 185 / 466 aa (39.7%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-295] | HATPase_c[346-464]
- Domain count: 2
- Matched identifier: HKOC_1764163
- Positioned domains: HisKA 230-295 ; HATPase_c 346-464
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS06410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_017357045
AssemblyASM1735704v1 · Chromosomereference genome · haploid
Genome composition2 696 962 bp · 56,5% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key