1 Response_reg#1
7-109 aa · 103 aa · 43.8% of protein
Raw token
Response_reg:7:1.97e-20:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI708_RS00725
Response regulator LytTR family
Bifidobacterium imperatoris · GCF_017357045
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017357045#BLI708_RS00725Stable P2CS identifier used across views.
GenomeGCF_017357045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 235 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-228 aa · 91 aa · 38.7% of protein
Raw token
LytTR:138:8.16e-21:228:97:98- Raw architecture: Response_reg:7:1.97e-20:109:106:111#LytTR:138:8.16e-21:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017357045::NZ_CP071591.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span120597-121304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI708_00725RefSeq proteinWP_101625082.1
Context group ID
GCF_017357045::NZ_CP071591.1::G00002Context members
BLI708_RS00725
Partner locus tags
BLI708_RS00725
Partner old locus tags
BLI708_00725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101625082.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S3F9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S3F9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI708_RS00725Primary locus identifier stored in the genes table.
Old locus tagBLI708_00725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071591.1Sequence record reported by the local genomic context database.
Genomic interval120 597-121 304 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span120 597-121 304 ntGCF_017357045::NZ_CP071591.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357045::NZ_CP071591.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071591.1All displayed genes belong to this local TCS context.
Neighborhood span120 597-121 304 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 597 nt121 304 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLI708_RS00725GCF_017357045#BLI708_RS00725
RRLytTRCurrent focus
120 597-121 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS00595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1023323
Simplified PFAM architecture for RROC_1023323
PFAM domain coverage: 192 / 235 aa (81.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-109] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_1023323
- Positioned domains: Response_reg 6-109 ; Response_reg 6-109 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS00595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_017357045
AssemblyASM1735704v1 · Chromosomereference genome · haploid
Genome composition2 696 962 bp · 56,5% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key