1 HisKA_3#1
237-300 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:237:6.19e-17:300:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI708_RS08840
Histidine kinase, Classic
Bifidobacterium imperatoris · GCF_017357045
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017357045#BLI708_RS08840Stable P2CS identifier used across views.
GenomeGCF_017357045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 449 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-441 aa · 98 aa · 21.8% of protein
Raw token
HATPase_c:344:0.000000000169:441:104:109- Raw architecture: HisKA_3:237:6.19e-17:300:64:68#HATPase_c:344:0.000000000169:441:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017357045::NZ_CP071591.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2094013-2095946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI708_08840RefSeq proteinWP_423220484.1
Context group ID
GCF_017357045::NZ_CP071591.1::G00015Context members
BLI708_RS08835BLI708_RS08840
Partner locus tags
BLI708_RS08835BLI708_RS08840
Partner old locus tags
BLI708_08835BLI708_08840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_423220484.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI708_RS08840Primary locus identifier stored in the genes table.
Old locus tagBLI708_08840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071591.1Sequence record reported by the local genomic context database.
Genomic interval2 094 663-2 095 946 nt1 284 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 094 013-2 095 946 ntGCF_017357045::NZ_CP071591.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357045::NZ_CP071591.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071591.1All displayed genes belong to this local TCS context.
Neighborhood span2 094 013-2 095 946 nt1 934 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 094 013 nt2 095 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI708_RS08835GCF_017357045#BLI708_RS08835
RRNarL
2 094 013-2 094 666 nt · Reverse (-)
BLI708_RS08840GCF_017357045#BLI708_RS08840
HKClassicCurrent focus
2 094 663-2 095 946 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002860405#Tam1G_RS09005Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1976446
Simplified PFAM architecture for HKOC_1976446
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[237-302]
- Domain count: 1
- Matched identifier: HKOC_1976446
- Positioned domains: HisKA_3 237-302
Cluster members and taxonomy
Representative gene: GCF_002860405#Tam1G_RS09005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_017357045
AssemblyASM1735704v1 · Chromosomereference genome · haploid
Genome composition2 696 962 bp · 56,5% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key