1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.86e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI708_RS05485
Response regulator OmpR family
Bifidobacterium imperatoris · GCF_017357045
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017357045#BLI708_RS05485Stable P2CS identifier used across views.
GenomeGCF_017357045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.85e-33:229:77:77- Raw architecture: Response_reg:4:2.86e-38:113:111:111#Trans_reg_C:153:1.85e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017357045::NZ_CP071591.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1340114-1342327Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI708_05485RefSeq proteinWP_033890565.1
Context group ID
GCF_017357045::NZ_CP071591.1::G00006Context members
BLI708_RS05480BLI708_RS05485
Partner locus tags
BLI708_RS05480BLI708_RS05485
Partner old locus tags
BLI708_05480BLI708_05485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033890565.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SFZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SFZ7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI708_RS05485Primary locus identifier stored in the genes table.
Old locus tagBLI708_05485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071591.1Sequence record reported by the local genomic context database.
Genomic interval1 341 623-1 342 327 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 340 114-1 342 327 ntGCF_017357045::NZ_CP071591.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017357045::NZ_CP071591.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071591.1All displayed genes belong to this local TCS context.
Neighborhood span1 340 114-1 342 327 nt2 214 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 340 114 nt1 342 327 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI708_RS05480GCF_017357045#BLI708_RS05480
HKClassic
1 340 114-1 341 409 nt · Forward (+)
BLI708_RS05485GCF_017357045#BLI708_RS05485
RROmpRCurrent focus
1 341 623-1 342 327 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS04910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049980
Simplified PFAM architecture for RROC_1049980
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1049980
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS04910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 020 965 · GCF_017357045
AssemblyASM1735704v1 · Chromosomereference genome · haploid
Genome composition2 696 962 bp · 56,5% GCBifidobacterium imperatoris
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key