1 Response_reg#1
12-121 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:12:0.00000000000000108:121:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI009_RS06560
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_017299595
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017299595#BLI009_RS06560Stable P2CS identifier used across views.
GenomeGCF_017299595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 226 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-217 aa · 56 aa · 24.8% of protein
Raw token
HTH_LUXR:162:4.86e-17:217:56:58- Raw architecture: Response_reg:12:0.00000000000000108:121:114:111#HTH_LUXR:162:4.86e-17:217:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017299595::NZ_CP071248.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1514420-1515100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI009_06560RefSeq proteinWP_206648273.1
Context group ID
GCF_017299595::NZ_CP071248.1::G00009Context members
BLI009_RS06560
Partner locus tags
BLI009_RS06560
Partner old locus tags
BLI009_06560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_206648273.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX1LHQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX1LHQ6_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI009_RS06560Primary locus identifier stored in the genes table.
Old locus tagBLI009_06560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071248.1Sequence record reported by the local genomic context database.
Genomic interval1 514 420-1 515 100 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 514 420-1 515 100 ntGCF_017299595::NZ_CP071248.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017299595::NZ_CP071248.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071248.1All displayed genes belong to this local TCS context.
Neighborhood span1 514 420-1 515 100 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 514 420 nt1 515 100 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLI009_RS06560GCF_017299595#BLI009_RS06560
RRNarLCurrent focus
1 514 420-1 515 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_017299595#BLI009_RS06560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1432198
Simplified PFAM architecture for RROC_1432198
PFAM domain coverage: 158 / 226 aa (69.9%)
1 aa226 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-115] | GerE[163-216]
- Domain count: 2
- Matched identifier: RROC_1432198
- Positioned domains: Response_reg 12-115 ; GerE 163-216
Cluster members and taxonomy
Representative gene: GCF_017299595#BLI009_RS06560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_017299595
AssemblyASM1729959v1 · Complete Genomehaploid
Genome composition2 673 222 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 34 · HK 11 · RR 20CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key