1 HAMP#1
190-258 aa · 69 aa · 13.7% of protein
Raw token
HAMP:190:0.0000000000000297:258:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS06095
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS06095Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 505 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HisKA#2
283-350 aa · 68 aa · 13.5% of protein
Raw token
HisKA:283:0.00000000000000231:350:68:643 HATPase_c#3
395-505 aa · 111 aa · 22.0% of protein
Raw token
HATPase_c:395:7.21e-20:505:112:109- Raw architecture: HAMP:190:0.0000000000000297:258:69:69#HisKA:283:0.00000000000000231:350:68:64#HATPase_c:395:7.21e-20:505:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000049.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8677-10871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_06040RefSeq proteinWP_278592449.1
Context group ID
GCF_016939255::NZ_JAFHBC010000049.1::G00028Context members
JTJ22_RS06095JTJ22_RS06100
Partner locus tags
JTJ22_RS06095JTJ22_RS06100
Partner old locus tags
JTJ22_06040JTJ22_06045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592449.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS06095Primary locus identifier stored in the genes table.
Old locus tagJTJ22_06040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000049.1Sequence record reported by the local genomic context database.
Genomic interval8 677-10 194 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 677-10 871 ntGCF_016939255::NZ_JAFHBC010000049.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000049.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000049.1All displayed genes belong to this local TCS context.
Neighborhood span8 677-10 871 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 677 nt10 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS06095GCF_016939255#JTJ22_RS06095
HKClassicCurrent focus
8 677-10 194 nt · Reverse (-)
JTJ22_RS06100GCF_016939255#JTJ22_RS06100
RROmpR
10 191-10 871 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS06095The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1451151
Simplified PFAM architecture for HKOC_1451151
PFAM domain coverage: 228 / 505 aa (45.1%)
1 aa505 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-257] | HisKA[283-350] | HATPase_c[396-504]
- Domain count: 3
- Matched identifier: HKOC_1451151
- Positioned domains: HAMP 207-257 ; HisKA 283-350 ; HATPase_c 396-504
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS06095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key