1 PAS_3#1
360-429 aa · 70 aa · 7.1% of protein
Raw token
PAS_3:360:0.0000232:429:71:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS05655
Histidine kinase, Hybrid
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeHybridLength980 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS05655Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length980 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage487 / 980 aa (49.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa980 aa
Domain-by-domain annotation5 items
2 HisKA#2
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:3.16e-19:536:67:643 HATPase_c#3
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:1.38e-31:701:118:1094 Response_reg#4
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:7.32e-19:833:114:1115 Response_reg#5
859-976 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:859:1.89e-32:976:118:111- Raw architecture: PAS_3:360:0.0000232:429:71:89#HisKA:470:3.16e-19:536:67:64#HATPase_c:584:1.38e-31:701:118:109#Response_reg:720:7.32e-19:833:114:111#Response_reg:859:1.89e-32:976:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000043.1::G00026
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span11316-17158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_05605RefSeq proteinWP_278592415.1
Context group ID
GCF_016939255::NZ_JAFHBC010000043.1::G00026Context members
JTJ22_RS05650JTJ22_RS05655
Partner locus tags
JTJ22_RS05650JTJ22_RS05655
Partner old locus tags
JTJ22_05600JTJ22_05605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS05655Primary locus identifier stored in the genes table.
Old locus tagJTJ22_05605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000043.1Sequence record reported by the local genomic context database.
Genomic interval14 216-17 158 nt2 943 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 316-17 158 ntGCF_016939255::NZ_JAFHBC010000043.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000043.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000043.1All displayed genes belong to this local TCS context.
Neighborhood span11 316-17 158 nt5 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 316 nt17 158 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS05650GCF_016939255#JTJ22_RS05650
HKHybrid
11 316-14 168 nt · Reverse (-)
JTJ22_RS05655GCF_016939255#JTJ22_RS05655
HKHybridCurrent focus
14 216-17 158 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS05655The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0306530
Simplified PFAM architecture for HKOC_0306530
PFAM domain coverage: 414 / 980 aa (42.2%)
1 aa980 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[859-975]
- Domain count: 4
- Matched identifier: HKOC_0306530
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 859-975
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS05655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key