1 HisKA#1
123-189 aa · 67 aa · 21.5% of protein
Raw token
HisKA:123:0.000000182:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS04940
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS04940Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 312 aa (44.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-312 aa · 72 aa · 23.1% of protein
Raw token
HATPase_c:241:3.96e-16:312:72:109- Raw architecture: HisKA:123:0.000000182:189:67:64#HATPase_c:241:3.96e-16:312:72:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000039.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_04890RefSeq proteinWP_278592341.1
Context group ID
GCF_016939255::NZ_JAFHBC010000039.1::G00022Context members
JTJ22_RS04940JTJ22_RS04945
Partner locus tags
JTJ22_RS04940JTJ22_RS04945
Partner old locus tags
JTJ22_04890JTJ22_04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS04940Primary locus identifier stored in the genes table.
Old locus tagJTJ22_04890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000039.1Sequence record reported by the local genomic context database.
Genomic interval1-937 nt937 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 626 ntGCF_016939255::NZ_JAFHBC010000039.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000039.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000039.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 626 nt1 626 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS04940GCF_016939255#JTJ22_RS04940
HKClassicCurrent focus
1-937 nt · Reverse (-)
JTJ22_RS04945GCF_016939255#JTJ22_RS04945
RROmpR
934-1 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS04940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876041
Simplified PFAM architecture for HKOC_2876041
PFAM domain coverage: 144 / 312 aa (46.2%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-312]
- Domain count: 2
- Matched identifier: HKOC_2876041
- Positioned domains: HisKA 124-189 ; HATPase_c 235-312
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS04940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key