1 HisKA#1
45-107 aa · 63 aa · 23.3% of protein
Raw token
HisKA:45:0.00000000000775:107:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS04215
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength270 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016939255#JTJ22_RS04215Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 270 aa (62.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
158-263 aa · 106 aa · 39.3% of protein
Raw token
HATPase_c:158:5.14e-18:263:106:109- Raw architecture: HisKA:45:0.00000000000775:107:63:64#HATPase_c:158:5.14e-18:263:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016939255::NZ_JAFHBC010000030.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_04165RefSeq proteinWP_278592275.1
Context group ID
GCF_016939255::NZ_JAFHBC010000030.1::G00021Context members
JTJ22_RS04215
Partner locus tags
JTJ22_RS04215
Partner old locus tags
JTJ22_04165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592275.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS04215Primary locus identifier stored in the genes table.
Old locus tagJTJ22_04165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000030.1Sequence record reported by the local genomic context database.
Genomic interval1-813 nt813 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-813 ntGCF_016939255::NZ_JAFHBC010000030.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000030.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000030.1All displayed genes belong to this local TCS context.
Neighborhood span1-813 nt813 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt813 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JTJ22_RS04215GCF_016939255#JTJ22_RS04215
HKClassicCurrent focus
1-813 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS04215The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2907706
Simplified PFAM architecture for HKOC_2907706
PFAM domain coverage: 166 / 270 aa (61.5%)
1 aa270 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[46-106] | HATPase_c[159-263]
- Domain count: 2
- Matched identifier: HKOC_2907706
- Positioned domains: HisKA 46-106 ; HATPase_c 159-263
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS04215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key