1 HAMP#1
187-254 aa · 68 aa · 13.5% of protein
Raw token
HAMP:187:0.000000000001:254:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS03455
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS03455Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 502 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 15.9% of protein
Raw token
His_kinase:285:2.11e-31:364:80:803 HATPase_c#3
383-492 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:383:0.000000000000001:492:110:109- Raw architecture: HAMP:187:0.000000000001:254:68:69#His_kinase:285:2.11e-31:364:80:80#HATPase_c:383:0.000000000000001:492:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000028.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71644-74728Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_03410RefSeq proteinWP_022426665.1
Context group ID
GCF_016939255::NZ_JAFHBC010000028.1::G00020Context members
JTJ22_RS03450JTJ22_RS03455
Partner locus tags
JTJ22_RS03450JTJ22_RS03455
Partner old locus tags
JTJ22_03405JTJ22_03410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022426665.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS03455Primary locus identifier stored in the genes table.
Old locus tagJTJ22_03410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000028.1Sequence record reported by the local genomic context database.
Genomic interval73 220-74 728 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 644-74 728 ntGCF_016939255::NZ_JAFHBC010000028.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000028.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000028.1All displayed genes belong to this local TCS context.
Neighborhood span71 644-74 728 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 644 nt74 728 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS03450GCF_016939255#JTJ22_RS03450
RRunclassified
71 644-73 242 nt · Reverse (-)
JTJ22_RS03455GCF_016939255#JTJ22_RS03455
HKClassicCurrent focus
73 220-74 728 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS16335Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464362
Simplified PFAM architecture for HKOC_1464362
PFAM domain coverage: 231 / 502 aa (46.0%)
1 aa502 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[209-254] | His_kinase[285-361] | HATPase_c[384-491]
- Domain count: 3
- Matched identifier: HKOC_1464362
- Positioned domains: HAMP 209-254 ; His_kinase 285-361 ; HATPase_c 384-491
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS16335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key