1 HAMP#1
177-245 aa · 69 aa · 14.5% of protein
Raw token
HAMP:177:0.0000000213:245:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS03130
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS03130Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 476 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.000000000000762:314:66:643 HATPase_c#3
362-471 aa · 110 aa · 23.1% of protein
Raw token
HATPase_c:362:2.58e-30:471:110:109- Raw architecture: HAMP:177:0.0000000213:245:69:69#HisKA:249:0.000000000000762:314:66:64#HATPase_c:362:2.58e-30:471:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000028.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5085-7208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_03085RefSeq proteinWP_118513179.1
Context group ID
GCF_016939255::NZ_JAFHBC010000028.1::G00019Context members
JTJ22_RS03130JTJ22_RS03135
Partner locus tags
JTJ22_RS03130JTJ22_RS03135
Partner old locus tags
JTJ22_03085JTJ22_03090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118513179.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS03130Primary locus identifier stored in the genes table.
Old locus tagJTJ22_03085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000028.1Sequence record reported by the local genomic context database.
Genomic interval5 085-6 515 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 085-7 208 ntGCF_016939255::NZ_JAFHBC010000028.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000028.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000028.1All displayed genes belong to this local TCS context.
Neighborhood span5 085-7 208 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 085 nt7 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS03130GCF_016939255#JTJ22_RS03130
HKClassicCurrent focus
5 085-6 515 nt · Reverse (-)
JTJ22_RS03135GCF_016939255#JTJ22_RS03135
RROmpR
6 519-7 208 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS02325Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1657299
Simplified PFAM architecture for HKOC_1657299
PFAM domain coverage: 176 / 476 aa (37.0%)
1 aa476 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-314] | HATPase_c[362-471]
- Domain count: 2
- Matched identifier: HKOC_1657299
- Positioned domains: HisKA 249-314 ; HATPase_c 362-471
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS02325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key