1 Response_reg#1
4-115 aa · 112 aa · 21.5% of protein
Raw token
Response_reg:4:4.28e-26:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS03030
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeunclassifiedLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS03030Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 521 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-468 aa · 47 aa · 9.0% of protein
Raw token
HTH_AraC:422:0.00000117:468:47:423 HTH_AraC#3
483-517 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:483:0.0000143:517:35:42- Raw architecture: Response_reg:4:4.28e-26:115:113:111#HTH_AraC:422:0.00000117:468:47:42#HTH_AraC:483:0.0000143:517:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000026.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129179-132564Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02985RefSeq proteinWP_278592188.1
Context group ID
GCF_016939255::NZ_JAFHBC010000026.1::G00017Context members
JTJ22_RS03025JTJ22_RS03030
Partner locus tags
JTJ22_RS03025JTJ22_RS03030
Partner old locus tags
JTJ22_02980JTJ22_02985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592188.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS03030Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000026.1Sequence record reported by the local genomic context database.
Genomic interval130 999-132 564 nt1 566 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span129 179-132 564 ntGCF_016939255::NZ_JAFHBC010000026.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000026.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000026.1All displayed genes belong to this local TCS context.
Neighborhood span129 179-132 564 nt3 386 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 179 nt132 564 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS03025GCF_016939255#JTJ22_RS03025
HKClassic
129 179-131 002 nt · Reverse (-)
JTJ22_RS03030GCF_016939255#JTJ22_RS03030
RRunclassifiedCurrent focus
130 999-132 564 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS03030The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0125084
Simplified PFAM architecture for RROC_0125084
PFAM domain coverage: 188 / 521 aa (36.1%)
1 aa521 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[443-518]
- Domain count: 2
- Matched identifier: RROC_0125084
- Positioned domains: Response_reg 4-115 ; HTH_18 443-518
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS03030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key