1 Response_reg#1
4-116 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:4:1.66e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS02975
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS02975Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 538 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000127:483:42:42- Raw architecture: Response_reg:4:1.66e-26:116:113:111#HTH_AraC:442:0.00000127:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000026.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116120-119520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02930RefSeq proteinWP_278592183.1
Context group ID
GCF_016939255::NZ_JAFHBC010000026.1::G00016Context members
JTJ22_RS02975JTJ22_RS02980
Partner locus tags
JTJ22_RS02975JTJ22_RS02980
Partner old locus tags
JTJ22_02930JTJ22_02935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592183.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS02975Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000026.1Sequence record reported by the local genomic context database.
Genomic interval116 120-117 736 nt1 617 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 120-119 520 ntGCF_016939255::NZ_JAFHBC010000026.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000026.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000026.1All displayed genes belong to this local TCS context.
Neighborhood span116 120-119 520 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 120 nt119 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS02975GCF_016939255#JTJ22_RS02975
RRunclassifiedCurrent focus
116 120-117 736 nt · Forward (+)
JTJ22_RS02980GCF_016939255#JTJ22_RS02980
HKClassic
117 733-119 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS02975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0095042
Simplified PFAM architecture for RROC_0095042
PFAM domain coverage: 325 / 538 aa (60.4%)
1 aa538 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[167-300] | HTH_18[457-534]
- Domain count: 3
- Matched identifier: RROC_0095042
- Positioned domains: Response_reg 4-116 ; GGDEF_2 167-300 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS02975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key