1 sCache_like#1
31-135 aa · 105 aa · 23.3% of protein
Raw token
sCache_like:31:0.0000000721:135:113:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS02795
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS02795Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage281 / 451 aa (62.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-290 aa · 65 aa · 14.4% of protein
Raw token
HisKA:226:5.79e-16:290:65:643 HATPase_c#3
335-445 aa · 111 aa · 24.6% of protein
Raw token
HATPase_c:335:1.31e-26:445:111:109- Raw architecture: sCache_like:31:0.0000000721:135:113:114#HisKA:226:5.79e-16:290:65:64#HATPase_c:335:1.31e-26:445:111:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000026.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75920-77946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02755RefSeq proteinWP_278592166.1
Context group ID
GCF_016939255::NZ_JAFHBC010000026.1::G00015Context members
JTJ22_RS02790JTJ22_RS02795
Partner locus tags
JTJ22_RS02790JTJ22_RS02795
Partner old locus tags
JTJ22_02750JTJ22_02755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592166.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS02795Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000026.1Sequence record reported by the local genomic context database.
Genomic interval76 591-77 946 nt1 356 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 920-77 946 ntGCF_016939255::NZ_JAFHBC010000026.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000026.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000026.1All displayed genes belong to this local TCS context.
Neighborhood span75 920-77 946 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 920 nt77 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS02790GCF_016939255#JTJ22_RS02790
RROmpR
75 920-76 594 nt · Forward (+)
JTJ22_RS02795GCF_016939255#JTJ22_RS02795
HKClassicCurrent focus
76 591-77 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS02795The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1954959
Simplified PFAM architecture for HKOC_1954959
PFAM domain coverage: 247 / 451 aa (54.8%)
1 aa451 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[59-131] | HisKA[226-290] | HATPase_c[338-446]
- Domain count: 3
- Matched identifier: HKOC_1954959
- Positioned domains: sCache_like 59-131 ; HisKA 226-290 ; HATPase_c 338-446
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS02795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key