1 Response_reg#1
5-111 aa · 107 aa · 48.6% of protein
Raw token
Response_reg:5:5.07e-35:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS02675
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS02675Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.54e-25:219:76:77- Raw architecture: Response_reg:5:5.07e-35:111:109:111#Trans_reg_C:146:1.54e-25:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000026.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49618-51635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02635RefSeq proteinWP_174235824.1
Context group ID
GCF_016939255::NZ_JAFHBC010000026.1::G00014Context members
JTJ22_RS02670JTJ22_RS02675
Partner locus tags
JTJ22_RS02670JTJ22_RS02675
Partner old locus tags
JTJ22_02630JTJ22_02635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_174235824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS02675Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000026.1Sequence record reported by the local genomic context database.
Genomic interval50 973-51 635 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 618-51 635 ntGCF_016939255::NZ_JAFHBC010000026.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000026.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000026.1All displayed genes belong to this local TCS context.
Neighborhood span49 618-51 635 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 618 nt51 635 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS02670GCF_016939255#JTJ22_RS02670
HKClassic
49 618-50 982 nt · Reverse (-)
JTJ22_RS02675GCF_016939255#JTJ22_RS02675
RROmpRCurrent focus
50 973-51 635 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005848555#EYS05_RS02560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1734641
Simplified PFAM architecture for RROC_1734641
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1734641
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_005848555#EYS05_RS02560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key