1 HisKA#1
235-296 aa · 62 aa · 13.7% of protein
Raw token
HisKA:235:0.0000000000000414:296:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS02670
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS02670Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-453 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:345:1.14e-20:453:109:109- Raw architecture: HisKA:235:0.0000000000000414:296:62:64#HATPase_c:345:1.14e-20:453:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000026.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49618-51635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_02630RefSeq proteinWP_278592154.1
Context group ID
GCF_016939255::NZ_JAFHBC010000026.1::G00014Context members
JTJ22_RS02670JTJ22_RS02675
Partner locus tags
JTJ22_RS02670JTJ22_RS02675
Partner old locus tags
JTJ22_02630JTJ22_02635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592154.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS02670Primary locus identifier stored in the genes table.
Old locus tagJTJ22_02630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000026.1Sequence record reported by the local genomic context database.
Genomic interval49 618-50 982 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 618-51 635 ntGCF_016939255::NZ_JAFHBC010000026.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000026.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000026.1All displayed genes belong to this local TCS context.
Neighborhood span49 618-51 635 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 618 nt51 635 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS02670GCF_016939255#JTJ22_RS02670
HKClassicCurrent focus
49 618-50 982 nt · Reverse (-)
JTJ22_RS02675GCF_016939255#JTJ22_RS02675
RROmpR
50 973-51 635 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS02670The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1917737
Simplified PFAM architecture for HKOC_1917737
PFAM domain coverage: 171 / 454 aa (37.7%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1917737
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS02670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key