1 HAMP#1
300-372 aa · 73 aa · 12.2% of protein
Raw token
HAMP:300:0.00000000000765:372:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JTJ22_RS01925
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_016939255
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016939255#JTJ22_RS01925Stable P2CS identifier used across views.
GenomeGCF_016939255Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage212 / 600 aa (35.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:387:4.64e-29:466:80:803 HATPase_c#3
478-536 aa · 59 aa · 9.8% of protein
Raw token
HATPase_c:478:0.0000000612:536:59:109- Raw architecture: HAMP:300:0.00000000000765:372:73:69#His_kinase:387:4.64e-29:466:80:80#HATPase_c:478:0.0000000612:536:59:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016939255::NZ_JAFHBC010000024.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20739-23313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJTJ22_01905RefSeq proteinWP_278592107.1
Context group ID
GCF_016939255::NZ_JAFHBC010000024.1::G00012Context members
JTJ22_RS01920JTJ22_RS01925
Partner locus tags
JTJ22_RS01920JTJ22_RS01925
Partner old locus tags
JTJ22_01900JTJ22_01905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278592107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJTJ22_RS01925Primary locus identifier stored in the genes table.
Old locus tagJTJ22_01905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFHBC010000024.1Sequence record reported by the local genomic context database.
Genomic interval21 511-23 313 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 739-23 313 ntGCF_016939255::NZ_JAFHBC010000024.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016939255::NZ_JAFHBC010000024.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFHBC010000024.1All displayed genes belong to this local TCS context.
Neighborhood span20 739-23 313 nt2 575 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 739 nt23 313 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JTJ22_RS01920GCF_016939255#JTJ22_RS01920
RRunclassified
20 739-21 506 nt · Reverse (-)
JTJ22_RS01925GCF_016939255#JTJ22_RS01925
HKClassicCurrent focus
21 511-23 313 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016939255#JTJ22_RS01925The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1054777
Simplified PFAM architecture for HKOC_1054777
PFAM domain coverage: 133 / 600 aa (22.2%)
1 aa600 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[389-465] | HATPase_c[482-537]
- Domain count: 2
- Matched identifier: HKOC_1054777
- Positioned domains: His_kinase 389-465 ; HATPase_c 482-537
Cluster members and taxonomy
Representative gene: GCF_016939255#JTJ22_RS01925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_016939255
AssemblyASM1693925v1 · Contighaploid
Genome composition3 556 316 bp · 44,5% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 94 · HK 46 · RR 45CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key