1 Response_reg#1
11-112 aa · 102 aa · 59.0% of protein
Raw token
Response_reg:11:6.77e-16:112:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GDP94_RS00565
Response regulator, unclassified
Bifidobacterium longum subsp. suillum · GCF_016882605
ClassRRTypeunclassifiedLength173 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016882605#GDP94_RS00565Stable P2CS identifier used across views.
GenomeGCF_016882605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length173 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 173 aa (59.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa173 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:11:6.77e-16:112:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016882605::NZ_WHVJ01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span130406-130927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGDP94_00590RefSeq proteinWP_341473513.1
Context group ID
GCF_016882605::NZ_WHVJ01000001.1::G00004Context members
GDP94_RS00565
Partner locus tags
GDP94_RS00565
Partner old locus tags
GDP94_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_341473513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGDP94_RS00565Primary locus identifier stored in the genes table.
Old locus tagGDP94_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WHVJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval130 406-130 927 nt522 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span130 406-130 927 ntGCF_016882605::NZ_WHVJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016882605::NZ_WHVJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WHVJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span130 406-130 927 nt522 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 406 nt130 927 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GDP94_RS00565GCF_016882605#GDP94_RS00565
RRunclassifiedCurrent focus
130 406-130 927 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016882605#GDP94_RS00565The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2195655
Simplified PFAM architecture for RROC_2195655
PFAM domain coverage: 109 / 173 aa (63.0%)
1 aa173 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[11-119]
- Domain count: 1
- Matched identifier: RROC_2195655
- Positioned domains: Response_reg 11-119
Cluster members and taxonomy
Representative gene: GCF_016882605#GDP94_RS00565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 931 217 · GCF_016882605
AssemblyASM1688260v1 · Scaffoldhaploid
Genome composition2 297 022 bp · 59,5% GCBifidobacterium longum subsp. suillum
Signal transduction countsGenes 21 · HK 9 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key