1 Response_reg#1
11-123 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:11:0.00000000000000217:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JQN89_RS04810
Response regulator NarL family
Bifidobacterium longum · GCF_016838685
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016838685#JQN89_RS04810Stable P2CS identifier used across views.
GenomeGCF_016838685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 223 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-216 aa · 56 aa · 25.1% of protein
Raw token
HTH_LUXR:161:0.00000000000517:216:56:58- Raw architecture: Response_reg:11:0.00000000000000217:123:114:111#HTH_LUXR:161:0.00000000000517:216:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016838685::NZ_CP069278.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1049865-1050536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJQN89_04810RefSeq proteinWP_203385582.1
Context group ID
GCF_016838685::NZ_CP069278.1::G00007Context members
JQN89_RS04810
Partner locus tags
JQN89_RS04810
Partner old locus tags
JQN89_04810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_203385582.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJQN89_RS04810Primary locus identifier stored in the genes table.
Old locus tagJQN89_04810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP069278.1Sequence record reported by the local genomic context database.
Genomic interval1 049 865-1 050 536 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 049 865-1 050 536 ntGCF_016838685::NZ_CP069278.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016838685::NZ_CP069278.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP069278.1All displayed genes belong to this local TCS context.
Neighborhood span1 049 865-1 050 536 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 049 865 nt1 050 536 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JQN89_RS04810GCF_016838685#JQN89_RS04810
RRNarLCurrent focus
1 049 865-1 050 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020008065#BCBL_RS08930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1063470
Simplified PFAM architecture for RROC_1063470
PFAM domain coverage: 168 / 234 aa (71.8%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[21-133] | GerE[173-227]
- Domain count: 2
- Matched identifier: RROC_1063470
- Positioned domains: Response_reg 21-133 ; GerE 173-227
Cluster members and taxonomy
Representative gene: GCF_020008065#BCBL_RS08930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_016838685
AssemblyASM1683868v1 · Complete Genomehaploid
Genome composition2 433 093 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key