1 Response_reg#1
1-74 aa · 74 aa · 60.7% of protein
Raw token
Response_reg:1:0.0000121:74:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JQN89_RS00410
Response regulator, CheY family
Bifidobacterium longum · GCF_016838685
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016838685#JQN89_RS00410Stable P2CS identifier used across views.
GenomeGCF_016838685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 122 aa (60.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.0000121:74:74:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016838685::NZ_CP069278.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73605-73973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJQN89_00410RefSeq proteinWP_117701598.1
Context group ID
GCF_016838685::NZ_CP069278.1::G00002Context members
JQN89_RS00410
Partner locus tags
JQN89_RS00410
Partner old locus tags
JQN89_00410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117701598.1Primary protein accession used for annex mappings.
UniProt accessionA0AB37LDK1Primary UniProt accession resolved in the annex database.
UniProt IDA0AB37LDK1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJQN89_RS00410Primary locus identifier stored in the genes table.
Old locus tagJQN89_00410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP069278.1Sequence record reported by the local genomic context database.
Genomic interval73 605-73 973 nt369 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 605-73 973 ntGCF_016838685::NZ_CP069278.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016838685::NZ_CP069278.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP069278.1All displayed genes belong to this local TCS context.
Neighborhood span73 605-73 973 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 605 nt73 973 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JQN89_RS00410GCF_016838685#JQN89_RS00410
RRCheYCurrent focus
73 605-73 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437695#DXC85_RS10370Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2406414
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003437695#DXC85_RS10370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_016838685
AssemblyASM1683868v1 · Complete Genomehaploid
Genome composition2 433 093 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key