1 Response_reg#1
25-136 aa · 112 aa · 46.9% of protein
Raw token
Response_reg:25:1.28e-27:136:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JQN89_RS02055
Response regulator NarL family
Bifidobacterium longum · GCF_016838685
ClassRRTypeNarLLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016838685#JQN89_RS02055Stable P2CS identifier used across views.
GenomeGCF_016838685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 239 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-230 aa · 57 aa · 23.8% of protein
Raw token
HTH_LUXR:174:6.33e-16:230:58:58- Raw architecture: Response_reg:25:1.28e-27:136:112:111#HTH_LUXR:174:6.33e-16:230:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016838685::NZ_CP069278.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span399244-399963Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJQN89_02055RefSeq proteinWP_203385606.1
Context group ID
GCF_016838685::NZ_CP069278.1::G00003Context members
JQN89_RS02055
Partner locus tags
JQN89_RS02055
Partner old locus tags
JQN89_02055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_203385606.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJQN89_RS02055Primary locus identifier stored in the genes table.
Old locus tagJQN89_02055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP069278.1Sequence record reported by the local genomic context database.
Genomic interval399 244-399 963 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span399 244-399 963 ntGCF_016838685::NZ_CP069278.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016838685::NZ_CP069278.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP069278.1All displayed genes belong to this local TCS context.
Neighborhood span399 244-399 963 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
399 244 nt399 963 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JQN89_RS02055GCF_016838685#JQN89_RS02055
RRNarLCurrent focus
399 244-399 963 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016838685#JQN89_RS02055The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0918221
Simplified PFAM architecture for RROC_0918221
PFAM domain coverage: 165 / 239 aa (69.0%)
1 aa239 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[23-136] | Sigma70_r4_2[168-218]
- Domain count: 2
- Matched identifier: RROC_0918221
- Positioned domains: Response_reg 23-136 ; Sigma70_r4_2 168-218
Cluster members and taxonomy
Representative gene: GCF_016838685#JQN89_RS02055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_016838685
AssemblyASM1683868v1 · Complete Genomehaploid
Genome composition2 433 093 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key