1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:3.2e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL737_RS03850
Response regulator OmpR family
Bifidobacterium longum subsp. suis · GCF_016759645
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016759645#JL737_RS03850Stable P2CS identifier used across views.
GenomeGCF_016759645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.73e-30:235:77:77- Raw architecture: Response_reg:15:3.2e-36:122:109:111#Trans_reg_C:164:1.73e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016759645::NZ_JAERWB010000009.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12904-14699Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL737_03860RefSeq proteinWP_202574674.1
Context group ID
GCF_016759645::NZ_JAERWB010000009.1::G00012Context members
JL737_RS03850JL737_RS03855
Partner locus tags
JL737_RS03850JL737_RS03855
Partner old locus tags
JL737_03860JL737_03865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202574674.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL737_RS03850Primary locus identifier stored in the genes table.
Old locus tagJL737_03860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWB010000009.1Sequence record reported by the local genomic context database.
Genomic interval12 904-13 626 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 904-14 699 ntGCF_016759645::NZ_JAERWB010000009.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759645::NZ_JAERWB010000009.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWB010000009.1All displayed genes belong to this local TCS context.
Neighborhood span12 904-14 699 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 904 nt14 699 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JL737_RS03850GCF_016759645#JL737_RS03850
RROmpRCurrent focus
12 904-13 626 nt · Forward (+)
JL737_RS03855GCF_016759645#JL737_RS03855
HKClassic
13 626-14 699 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759645#JL737_RS03850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0893072
Simplified PFAM architecture for RROC_0893072
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0893072
- Positioned domains: Response_reg 15-122 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_016759645#JL737_RS03850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_016759645
AssemblyASM1675964v1 · Contighaploid
Genome composition2 364 439 bp · 59,5% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 20 · HK 8 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key