1 Response_reg#1
47-160 aa · 114 aa · 54.5% of protein
Raw token
Response_reg:47:6.35e-16:160:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JL737_RS03780
Response regulator, CheY family
Bifidobacterium longum subsp. suis · GCF_016759645
ClassRRTypeCheYLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016759645#JL737_RS03780Stable P2CS identifier used across views.
GenomeGCF_016759645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 209 aa (54.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:47:6.35e-16:160:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016759645::NZ_JAERWB010000008.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108856-109485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJL737_03790RefSeq proteinWP_327785692.1
Context group ID
GCF_016759645::NZ_JAERWB010000008.1::G00011Context members
JL737_RS03780
Partner locus tags
JL737_RS03780
Partner old locus tags
JL737_03790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327785692.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJL737_RS03780Primary locus identifier stored in the genes table.
Old locus tagJL737_03790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAERWB010000008.1Sequence record reported by the local genomic context database.
Genomic interval108 856-109 485 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 856-109 485 ntGCF_016759645::NZ_JAERWB010000008.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016759645::NZ_JAERWB010000008.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAERWB010000008.1All displayed genes belong to this local TCS context.
Neighborhood span108 856-109 485 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 856 nt109 485 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JL737_RS03780GCF_016759645#JL737_RS03780
RRCheYCurrent focus
108 856-109 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016759645#JL737_RS03780The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2048650
Simplified PFAM architecture for RROC_2048650
PFAM domain coverage: 113 / 209 aa (54.1%)
1 aa209 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[47-159]
- Domain count: 1
- Matched identifier: RROC_2048650
- Positioned domains: Response_reg 47-159
Cluster members and taxonomy
Representative gene: GCF_016759645#JL737_RS03780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_016759645
AssemblyASM1675964v1 · Contighaploid
Genome composition2 364 439 bp · 59,5% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 20 · HK 8 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key