1 Response_reg#1
7-87 aa · 81 aa · 34.2% of protein
Raw token
Response_reg:7:0.0000000765:87:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6I62_RS01940
Response regulator LytTR family
Thomasclavelia ramosa · GCF_016728785
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016728785#I6I62_RS01940Stable P2CS identifier used across views.
GenomeGCF_016728785Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 237 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-230 aa · 93 aa · 39.2% of protein
Raw token
LytTR:138:0.00000000000000249:230:98:98- Raw architecture: Response_reg:7:0.0000000765:87:83:111#LytTR:138:0.00000000000000249:230:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016728785::NZ_CP068170.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span419187-419900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6I62_01940RefSeq proteinWP_201900168.1
Context group ID
GCF_016728785::NZ_CP068170.1::G00005Context members
I6I62_RS01940
Partner locus tags
I6I62_RS01940
Partner old locus tags
I6I62_01940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201900168.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6I62_RS01940Primary locus identifier stored in the genes table.
Old locus tagI6I62_01940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP068170.1Sequence record reported by the local genomic context database.
Genomic interval419 187-419 900 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span419 187-419 900 ntGCF_016728785::NZ_CP068170.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016728785::NZ_CP068170.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP068170.1All displayed genes belong to this local TCS context.
Neighborhood span419 187-419 900 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
419 187 nt419 900 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I6I62_RS01940GCF_016728785#I6I62_RS01940
RRLytTRCurrent focus
419 187-419 900 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016728785#I6I62_RS01940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0973595
Simplified PFAM architecture for RROC_0973595
PFAM domain coverage: 175 / 237 aa (73.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-91] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0973595
- Positioned domains: Response_reg 7-91 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_016728785#I6I62_RS01940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_016728785
AssemblyASM1672878v1 · Complete Genomereference genome · haploid
Genome composition3 543 719 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 54 · HK 24 · RR 30CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key