1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000214:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT97_RS13650
Histidine kinase, Classic
Bacillus sp. TH12 · GCF_016651225
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016651225#JFT97_RS13650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 490 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000405:323:66:643 HATPase_c#3
369-480 aa · 112 aa · 22.9% of protein
Raw token
HATPase_c:369:7.64e-17:480:113:109- Raw architecture: HAMP:164:0.00000000000000214:233:70:69#HisKA:258:0.0000000000000405:323:66:64#HATPase_c:369:7.64e-17:480:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016651225::NZ_JAEKEI010000002.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2234991-2236463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT97_13650RefSeq proteinWP_201056558.1
Context group ID
GCF_016651225::NZ_JAEKEI010000002.1::G00038Context members
JFT97_RS13650
Partner locus tags
JFT97_RS13650
Partner old locus tags
JFT97_13650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201056558.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT97_RS13650Primary locus identifier stored in the genes table.
Old locus tagJFT97_13650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEI010000002.1Sequence record reported by the local genomic context database.
Genomic interval2 234 991-2 236 463 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 234 991-2 236 463 ntGCF_016651225::NZ_JAEKEI010000002.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651225::NZ_JAEKEI010000002.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 234 991-2 236 463 nt1 473 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 234 991 nt2 236 463 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT97_RS13650GCF_016651225#JFT97_RS13650
HKClassicCurrent focus
2 234 991-2 236 463 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651225#JFT97_RS13650The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1536798
Simplified PFAM architecture for HKOC_1536798
PFAM domain coverage: 229 / 490 aa (46.7%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1536798
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_016651225#JFT97_RS13650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 378 · GCF_016651225
AssemblyASM1665122v1 · Contighaploid
Genome composition5 819 177 bp · 35,5% GCBacillus sp. TH12
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key