1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000362:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT97_RS02880
Histidine kinase, Classic
Bacillus sp. TH12 · GCF_016651225
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016651225#JFT97_RS02880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 672 aa (58.3%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 PAS_9#2
347-441 aa · 95 aa · 14.1% of protein
Raw token
PAS_9:347:0.00000265:441:107:1023 HisKA#3
459-516 aa · 58 aa · 8.6% of protein
Raw token
HisKA:459:0.0000000000000103:516:58:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:3.17e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000362:163:143:133#PAS_9:347:0.00000265:441:107:102#HisKA:459:0.0000000000000103:516:58:64#HATPase_c:568:3.17e-19:665:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016651225::NZ_JAEKEI010000002.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73987-76005Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT97_02880RefSeq proteinWP_201055385.1
Context group ID
GCF_016651225::NZ_JAEKEI010000002.1::G00005Context members
JFT97_RS02880
Partner locus tags
JFT97_RS02880
Partner old locus tags
JFT97_02880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201055385.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT97_RS02880Primary locus identifier stored in the genes table.
Old locus tagJFT97_02880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEI010000002.1Sequence record reported by the local genomic context database.
Genomic interval73 987-76 005 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 987-76 005 ntGCF_016651225::NZ_JAEKEI010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651225::NZ_JAEKEI010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span73 987-76 005 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 987 nt76 005 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFT97_RS02880GCF_016651225#JFT97_RS02880
HKClassicCurrent focus
73 987-76 005 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651225#JFT97_RS02880The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0840590
Simplified PFAM architecture for HKOC_0840590
PFAM domain coverage: 300 / 672 aa (44.6%)
1 aa672 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[459-516] | HATPase_c[565-666]
- Domain count: 3
- Matched identifier: HKOC_0840590
- Positioned domains: GAF 24-163 ; HisKA 459-516 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_016651225#JFT97_RS02880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 378 · GCF_016651225
AssemblyASM1665122v1 · Contighaploid
Genome composition5 819 177 bp · 35,5% GCBacillus sp. TH12
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key