1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:1.28e-24:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT97_RS12925
Response regulator OmpR family
Bacillus sp. TH12 · GCF_016651225
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651225#JFT97_RS12925Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 234 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:155:2.26e-24:225:72:77- Raw architecture: Response_reg:5:1.28e-24:113:110:111#Trans_reg_C:155:2.26e-24:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651225::NZ_JAEKEI010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2055762-2057455Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT97_12925RefSeq proteinWP_201056460.1
Context group ID
GCF_016651225::NZ_JAEKEI010000002.1::G00033Context members
JFT97_RS12925JFT97_RS12930
Partner locus tags
JFT97_RS12925JFT97_RS12930
Partner old locus tags
JFT97_12925JFT97_12930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201056460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT97_RS12925Primary locus identifier stored in the genes table.
Old locus tagJFT97_12925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEI010000002.1Sequence record reported by the local genomic context database.
Genomic interval2 055 762-2 056 466 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 055 762-2 057 455 ntGCF_016651225::NZ_JAEKEI010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651225::NZ_JAEKEI010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 055 762-2 057 455 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 055 762 nt2 057 455 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT97_RS12925GCF_016651225#JFT97_RS12925
RROmpRCurrent focus
2 055 762-2 056 466 nt · Forward (+)
JFT97_RS12930GCF_016651225#JFT97_RS12930
HKClassic
2 056 469-2 057 455 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651225#JFT97_RS12925The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1061624
Simplified PFAM architecture for RROC_1061624
PFAM domain coverage: 180 / 234 aa (76.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1061624
- Positioned domains: Response_reg 5-112 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_016651225#JFT97_RS12925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 378 · GCF_016651225
AssemblyASM1665122v1 · Contighaploid
Genome composition5 819 177 bp · 35,5% GCBacillus sp. TH12
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key