1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.00000000013:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT97_RS03975
Histidine kinase, Classic
Bacillus sp. TH12 · GCF_016651225
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651225#JFT97_RS03975Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 487 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000585:330:66:643 HATPase_c#3
377-487 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:377:1.32e-33:487:111:109- Raw architecture: HAMP:192:0.00000000013:259:70:69#HisKA:265:0.0000000000000585:330:66:64#HATPase_c:377:1.32e-33:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651225::NZ_JAEKEI010000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span308781-310993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT97_03975RefSeq proteinWP_201055494.1
Context group ID
GCF_016651225::NZ_JAEKEI010000002.1::G00010Context members
JFT97_RS03975JFT97_RS03980
Partner locus tags
JFT97_RS03975JFT97_RS03980
Partner old locus tags
JFT97_03975JFT97_03980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201055494.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT97_RS03975Primary locus identifier stored in the genes table.
Old locus tagJFT97_03975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEI010000002.1Sequence record reported by the local genomic context database.
Genomic interval308 781-310 244 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span308 781-310 993 ntGCF_016651225::NZ_JAEKEI010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651225::NZ_JAEKEI010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span308 781-310 993 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 781 nt310 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT97_RS03975GCF_016651225#JFT97_RS03975
HKClassicCurrent focus
308 781-310 244 nt · Reverse (-)
JFT97_RS03980GCF_016651225#JFT97_RS03980
RROmpR
310 322-310 993 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651225#JFT97_RS03975The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1562601
Simplified PFAM architecture for HKOC_1562601
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1562601
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_016651225#JFT97_RS03975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 378 · GCF_016651225
AssemblyASM1665122v1 · Contighaploid
Genome composition5 819 177 bp · 35,5% GCBacillus sp. TH12
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key