1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.00000000117:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT97_RS02480
Histidine kinase, Classic
Bacillus sp. TH12 · GCF_016651225
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651225#JFT97_RS02480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 359 aa (69.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-185 aa · 66 aa · 18.4% of protein
Raw token
HisKA:120:3.56e-17:185:66:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:3.26e-27:348:111:109- Raw architecture: HAMP:39:0.00000000117:109:71:69#HisKA:120:3.56e-17:185:66:64#HATPase_c:238:3.26e-27:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651225::NZ_JAEKEI010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span506363-508152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT97_02480RefSeq proteinWP_033728918.1
Context group ID
GCF_016651225::NZ_JAEKEI010000001.1::G00003Context members
JFT97_RS02480JFT97_RS02485
Partner locus tags
JFT97_RS02480JFT97_RS02485
Partner old locus tags
JFT97_02480JFT97_02485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033728918.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT97_RS02480Primary locus identifier stored in the genes table.
Old locus tagJFT97_02480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEI010000001.1Sequence record reported by the local genomic context database.
Genomic interval506 363-507 442 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span506 363-508 152 ntGCF_016651225::NZ_JAEKEI010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651225::NZ_JAEKEI010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span506 363-508 152 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
506 363 nt508 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT97_RS02480GCF_016651225#JFT97_RS02480
HKClassicCurrent focus
506 363-507 442 nt · Reverse (-)
JFT97_RS02485GCF_016651225#JFT97_RS02485
RROmpR
507 439-508 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS01980Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753307
Simplified PFAM architecture for HKOC_2753307
PFAM domain coverage: 231 / 359 aa (64.3%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[120-185] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2753307
- Positioned domains: HAMP 56-109 ; HisKA 120-185 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS01980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 378 · GCF_016651225
AssemblyASM1665122v1 · Contighaploid
Genome composition5 819 177 bp · 35,5% GCBacillus sp. TH12
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key