1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:2.23e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU54_RS19110
Response regulator OmpR family
Bacillus sp. TH19 · GCF_016651075
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651075#JFU54_RS19110Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:5.28e-27:220:78:77- Raw architecture: Response_reg:4:2.23e-36:113:111:111#Trans_reg_C:143:5.28e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651075::NZ_JAEKEO010000010.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span265737-267949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU54_19110RefSeq proteinWP_002010439.1
Context group ID
GCF_016651075::NZ_JAEKEO010000010.1::G00050Context members
JFU54_RS19105JFU54_RS19110
Partner locus tags
JFU54_RS19105JFU54_RS19110
Partner old locus tags
JFU54_19105JFU54_19110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002010439.1Primary protein accession used for annex mappings.
UniProt accessionR8HP58Primary UniProt accession resolved in the annex database.
UniProt IDR8HP58_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU54_RS19110Primary locus identifier stored in the genes table.
Old locus tagJFU54_19110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEO010000010.1Sequence record reported by the local genomic context database.
Genomic interval267 278-267 949 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span265 737-267 949 ntGCF_016651075::NZ_JAEKEO010000010.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651075::NZ_JAEKEO010000010.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEO010000010.1All displayed genes belong to this local TCS context.
Neighborhood span265 737-267 949 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
265 737 nt267 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU54_RS19105GCF_016651075#JFU54_RS19105
HKClassic
265 737-267 200 nt · Reverse (-)
JFU54_RS19110GCF_016651075#JFU54_RS19110
RROmpRCurrent focus
267 278-267 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586791
Simplified PFAM architecture for RROC_1586791
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[143-219]
- Domain count: 2
- Matched identifier: RROC_1586791
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 143-219 ; Trans_reg_C 143-219
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 385 · GCF_016651075
AssemblyASM1665107v1 · Contighaploid
Genome composition5 767 003 bp · 35,5% GCBacillus sp. TH19
Signal transduction countsGenes 121 · HK 63 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key