1 HAMP#1
198-268 aa · 71 aa · 14.0% of protein
Raw token
HAMP:198:0.000000156:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU54_RS00625
Histidine kinase, Classic
Bacillus sp. TH19 · GCF_016651075
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651075#JFU54_RS00625Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 506 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 13.4% of protein
Raw token
HisKA:279:9.59e-17:346:68:643 HATPase_c#3
389-498 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:389:2.92e-32:498:110:109- Raw architecture: HAMP:198:0.000000156:268:71:69#HisKA:279:9.59e-17:346:68:64#HATPase_c:389:2.92e-32:498:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651075::NZ_JAEKEO010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span128529-130732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU54_00625RefSeq proteinWP_201063442.1
Context group ID
GCF_016651075::NZ_JAEKEO010000001.1::G00003Context members
JFU54_RS00620JFU54_RS00625
Partner locus tags
JFU54_RS00620JFU54_RS00625
Partner old locus tags
JFU54_00620JFU54_00625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201063442.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU54_RS00625Primary locus identifier stored in the genes table.
Old locus tagJFU54_00625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEO010000001.1Sequence record reported by the local genomic context database.
Genomic interval129 212-130 732 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 529-130 732 ntGCF_016651075::NZ_JAEKEO010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651075::NZ_JAEKEO010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span128 529-130 732 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 529 nt130 732 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU54_RS00620GCF_016651075#JFU54_RS00620
RROmpR
128 529-129 215 nt · Forward (+)
JFU54_RS00625GCF_016651075#JFU54_RS00625
HKClassicCurrent focus
129 212-130 732 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016651075#JFU54_RS00625The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1446170
Simplified PFAM architecture for HKOC_1446170
PFAM domain coverage: 177 / 506 aa (35.0%)
1 aa506 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[280-345] | HATPase_c[389-499]
- Domain count: 2
- Matched identifier: HKOC_1446170
- Positioned domains: HisKA 280-345 ; HATPase_c 389-499
Cluster members and taxonomy
Representative gene: GCF_016651075#JFU54_RS00625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 385 · GCF_016651075
AssemblyASM1665107v1 · Contighaploid
Genome composition5 767 003 bp · 35,5% GCBacillus sp. TH19
Signal transduction countsGenes 121 · HK 63 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key