1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:4.89e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU18_RS09860
Response regulator OmpR family
Bacillus sp. TH22 · GCF_016651015
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651015#JFU18_RS09860Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.27e-34:230:78:77- Raw architecture: Response_reg:6:4.89e-35:114:110:111#Trans_reg_C:153:4.27e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651015::NZ_JAEKER010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1943500-1945938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU18_09860RefSeq proteinWP_002064182.1
Context group ID
GCF_016651015::NZ_JAEKER010000001.1::G00025Context members
JFU18_RS09860JFU18_RS09865
Partner locus tags
JFU18_RS09860JFU18_RS09865
Partner old locus tags
JFU18_09860JFU18_09865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002064182.1Primary protein accession used for annex mappings.
UniProt accessionA0A243ANZ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A243ANZ9_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU18_RS09860Primary locus identifier stored in the genes table.
Old locus tagJFU18_09860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKER010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 943 500-1 944 201 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 943 500-1 945 938 ntGCF_016651015::NZ_JAEKER010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651015::NZ_JAEKER010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKER010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 943 500-1 945 938 nt2 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 943 500 nt1 945 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU18_RS09860GCF_016651015#JFU18_RS09860
RROmpRCurrent focus
1 943 500-1 944 201 nt · Forward (+)
JFU18_RS09865GCF_016651015#JFU18_RS09865
HKClassic
1 944 211-1 945 938 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS05045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080882
Simplified PFAM architecture for RROC_1080882
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1080882
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS05045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 388 · GCF_016651015
AssemblyASM1665101v1 · Contighaploid
Genome composition5 822 214 bp · 35,5% GCBacillus sp. TH22
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key