1 HAMP#1
192-258 aa · 67 aa · 13.5% of protein
Raw token
HAMP:192:8.44e-17:258:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU18_RS06460
Histidine kinase, Classic
Bacillus sp. TH22 · GCF_016651015
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016651015#JFU18_RS06460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 496 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-334 aa · 65 aa · 13.1% of protein
Raw token
HisKA:270:0.0000000000000157:334:65:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:8.29e-30:492:110:109- Raw architecture: HAMP:192:8.44e-17:258:67:69#HisKA:270:0.0000000000000157:334:65:64#HATPase_c:383:8.29e-30:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016651015::NZ_JAEKER010000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1290949-1293144Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU18_06460RefSeq proteinWP_201032961.1
Context group ID
GCF_016651015::NZ_JAEKER010000001.1::G00013Context members
JFU18_RS06455JFU18_RS06460
Partner locus tags
JFU18_RS06455JFU18_RS06460
Partner old locus tags
JFU18_06455JFU18_06460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201032961.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU18_RS06460Primary locus identifier stored in the genes table.
Old locus tagJFU18_06460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKER010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 291 654-1 293 144 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 290 949-1 293 144 ntGCF_016651015::NZ_JAEKER010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016651015::NZ_JAEKER010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKER010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 290 949-1 293 144 nt2 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 290 949 nt1 293 144 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU18_RS06455GCF_016651015#JFU18_RS06455
RROmpR
1 290 949-1 291 638 nt · Reverse (-)
JFU18_RS06460GCF_016651015#JFU18_RS06460
HKClassicCurrent focus
1 291 654-1 293 144 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS24760Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1500992
Simplified PFAM architecture for HKOC_1500992
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-258] | HisKA[270-334] | HATPase_c[383-493]
- Domain count: 3
- Matched identifier: HKOC_1500992
- Positioned domains: HAMP 206-258 ; HisKA 270-334 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS24760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 388 · GCF_016651015
AssemblyASM1665101v1 · Contighaploid
Genome composition5 822 214 bp · 35,5% GCBacillus sp. TH22
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key