1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.00000242:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS17050
Histidine kinase, Classic
Bacillus sp. TH23 · GCF_016650995
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650995#JFU08_RS17050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.0000000000188:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:1.41e-26:364:113:109- Raw architecture: HAMP:63:0.00000242:130:68:69#HisKA:141:0.0000000000188:208:68:64#HATPase_c:253:1.41e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650995::NZ_JAEKES010000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3135353-3137150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_17050RefSeq proteinWP_201034433.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00033Context members
JFU08_RS17050JFU08_RS17055
Partner locus tags
JFU08_RS17050JFU08_RS17055
Partner old locus tags
JFU08_17050JFU08_17055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201034433.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS17050Primary locus identifier stored in the genes table.
Old locus tagJFU08_17050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval3 135 353-3 136 459 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 135 353-3 137 150 ntGCF_016650995::NZ_JAEKES010000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 135 353-3 137 150 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 135 353 nt3 137 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU08_RS17050GCF_016650995#JFU08_RS17050
HKClassicCurrent focus
3 135 353-3 136 459 nt · Reverse (-)
JFU08_RS17055GCF_016650995#JFU08_RS17055
RROmpR
3 136 452-3 137 150 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650995#JFU08_RS17050The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2700978
Simplified PFAM architecture for HKOC_2700978
PFAM domain coverage: 224 / 368 aa (60.9%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2700978
- Positioned domains: HAMP 83-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_016650995#JFU08_RS17050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key