1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.52e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS01725
Response regulator OmpR family
Bacillus sp. TH23 · GCF_016650995
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650995#JFU08_RS01725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.13e-33:227:77:77- Raw architecture: Response_reg:4:2.52e-32:113:111:111#Trans_reg_C:151:1.13e-33:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650995::NZ_JAEKES010000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116802-118997Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_01725RefSeq proteinWP_201032962.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00005Context members
JFU08_RS01720JFU08_RS01725
Partner locus tags
JFU08_RS01720JFU08_RS01725
Partner old locus tags
JFU08_01720JFU08_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201032962.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS01725Primary locus identifier stored in the genes table.
Old locus tagJFU08_01725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval118 308-118 997 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 802-118 997 ntGCF_016650995::NZ_JAEKES010000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span116 802-118 997 nt2 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 802 nt118 997 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU08_RS01720GCF_016650995#JFU08_RS01720
HKClassic
116 802-118 292 nt · Forward (+)
JFU08_RS01725GCF_016650995#JFU08_RS01725
RROmpRCurrent focus
118 308-118 997 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS24765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1271425
Simplified PFAM architecture for RROC_1271425
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1271425
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS24765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key