1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.000000000000106:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS16830
Histidine kinase, Classic
Bacillus sp. TH23 · GCF_016650995
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650995#JFU08_RS16830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.0000000000000233:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:5.41e-23:616:113:109- Raw architecture: HAMP:311:0.000000000000106:378:68:69#HisKA:398:0.0000000000000233:462:65:64#HATPase_c:506:5.41e-23:616:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650995::NZ_JAEKES010000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3089776-3092315Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_16830RefSeq proteinWP_201034410.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00030Context members
JFU08_RS16830JFU08_RS16835
Partner locus tags
JFU08_RS16830JFU08_RS16835
Partner old locus tags
JFU08_16830JFU08_16835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201034410.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS16830Primary locus identifier stored in the genes table.
Old locus tagJFU08_16830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval3 089 776-3 091 629 nt1 854 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 089 776-3 092 315 ntGCF_016650995::NZ_JAEKES010000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 089 776-3 092 315 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 089 776 nt3 092 315 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU08_RS16830GCF_016650995#JFU08_RS16830
HKClassicCurrent focus
3 089 776-3 091 629 nt · Reverse (-)
JFU08_RS16835GCF_016650995#JFU08_RS16835
RROmpR
3 091 626-3 092 315 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650995#JFU08_RS16830The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0983387
Simplified PFAM architecture for HKOC_0983387
PFAM domain coverage: 226 / 617 aa (36.6%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[506-616]
- Domain count: 3
- Matched identifier: HKOC_0983387
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 506-616
Cluster members and taxonomy
Representative gene: GCF_016650995#JFU08_RS16830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key